Publications
Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation
Adler FR, Anderson ARA, Bhushan A, Bogdan P, Bravo-Cordero JJ, Brock A, Chen Y, Cukierman E, DelGiorno KE, Denis GV, Ferrall-Fairbanks MC, et al. (2023) Cell Systems
Progenitor hierarchy of chronic myelomonocytic leukemia identifies inflammatory monocytic-biased trajectory linked to worse outcomes
Ferrall-Fairbanks MC*, Dhawan A*, Johnson B, Newman H, Volpe V, Letson C, Ball M, Hunter AM, Balasis ME, Kruer TL, Ben-Crentsil NA, Kroeger JL, Balderas R, Komrokji RS, Sallman DA, Zhang J, Bejar R, Altrock PM, Padron E (2022) Blood Cancer Discovery
Quantification of T- and B-cell immune receptor distribution diversity characterizes immune cell infiltration and lymphocyte heterogeneity in clear cell renal cell carcinoma
Ferrall-Fairbanks MC, Chakiryan NH, Chobrutskiy BI, Kim Y, Teer JK, Berglund A, Mule J, Fournier M, Siegel E, Falasiri S, Arturo JF, Katende EN, Blanck G, Manley BJ, Altrock PM (2022) Cancer Research
Geospatial cellular distributions of cancer-associated fibroblasts significantly impacts clinical outcomes in metastatic clear cell renal cell carcinoma
Chakiryan NH, Kimmel GJ, Kim Y, Johnson J, Clark N, Hajiran A, Chang A, Aydin AM, Zemp L, Katende E, Chaoud J, Ferrall-Fairbanks MC, Spiess PE, Francis N, Fournier M, Dhillon J, Park JY, Wang L, Mule J, Altrock PM, Manley BJ (2021) Cancers
Spontaneous cell fusions as a mechanism of parasexual recombination in tumor cell populations
Miroshnychenko D*, Baratchart E*, Ferrall-Fairbanks MC, Vander Velde R, Laurie MA, Bui M, Altrock PM, Basanta D, Marusyk A (2021) Nature Ecology & Evolution
The harsh microenvironment in early breast cancer selects for a Warburg phenotype
Damaghi M, West J, Robertson-Tessi M, Liping X, Ferrall-Fairbanks MC, Stewart PA, Persi E, Fridley BL, Altrock PM, Gatenby RA, Sims PA, Anderson ARA, Gillies RJ (2021) Proceedings of the National Academy of Sciences of the United States of America
Investigating inter- and intrasample diversity of single-cell RNA sequencing datasets
Ferrall-Fairbanks MC, Altrock PM (2020) In: Markowitz, J. (eds) Translational Bioinformatics for Therapeutic Development. Methods in Molecular Biology
Reassessing enzyme kinetics: Considering protease-as-substrate interactions in proteolytic networks
Ferrall-Fairbanks MC, Kieslich CA, Platt MO (2020) Proceedings of the National Academy of Sciences of the United States of America
Re: Simulation analysis for tumor radiotherapy based on three-component mathematical models
Ferrall-Fairbanks MC, Glazar DJ, Brady RJ, Kimmel GJ, Zahid MU, Altrock PM, Enderling H (2019) Journal of Applied Clinical Medical Physics
Leveraging single cell RNA sequencing experiments to model intra-tumor heterogeneity
Ferrall-Fairbanks MC, Ball M, Padron E, Altrock PM (2019) JCO Clinical Cancer Informatics
Long-term cryopreservation and revival of tissue engineered skeletal muscle
Grant L*, Raman R*, Cvetkovic C, Ferrall-Fairbanks MC, Diaz GP, Hadley P, Platt MO, Bashir R (2019) Tissue Engineering Part A
Computational predictions of novel cysteine cathepsins-mediated fibrinogen degradation
Ferrall-Fairbanks MC*, West DM*, Douglas SA, Averett RD, Platt MO (2018) Protein Science
Investigating the life expectancy and proteolytic degradation of engineered skeletal muscle biological machines
Cvetkovic C*, Ferrall-Fairbanks MC*, Ko E, Grant L, Kong H, Platt MO, Bahir R (2017) Scientific Reports
PACMANS: A bioinformatically informed algorithm to predict, design, and disrupt protease-on-protease hydrolysis
Ferrall-Fairbanks MC, Barry ZT, Affer M, Shuler MA, Moomaw EW, Platt MO (2017) Protein Science